This is an online handout for data analysis in mass spectrometry based metabolomics. It would cover a full reproducible metabolomics workflow for data analysis and important topics related to metabolomics. Here is a list:

  • Software selection
  • Pretreatment
  • Batch correction
  • Annotation
  • Omics analysis

This is a book written in Bookdown. You could contribute it by a pull request in Github.

R and Rstudio are the softwares needed in this workflow.