This is an online handout for mass spectrometry based metabolomics data analysis. It would cover a full reproducible metabolomics workflow for data analysis and important topics related to metabolomics. Here is a list of topics:
- Sample collection
- Sample pretreatment
- Principles of metabolomics data analysis
- Software selection
- Batch correction
- Omics analysis
This is a book written in Bookdown. You could contribute it by a pull request in Github. A workshop based on this book could be found here. Meanwhile, a docker image xcmsrocker is available for metabolomics reproducible research.