This is an online handout for mass spectrometry based metabolomics data analysis. It would cover a full reproducible metabolomics workflow for data analysis and important topics related to metabolomics. Here is a list of topics:

  • Sample collection
  • Pretreatment
  • Principles of metabolomics data analysis
  • Software selection
  • Batch correction
  • Annotation
  • Omics analysis
  • Exposome

This is a book written in Bookdown. You could contribute it by a pull request in Github.

R and Rstudio are the softwares needed in this workflow.